Remove unused initialize-skills.sh script

- Deleted lib/initialize-skills.sh (no longer called)
- Removed permission entry from .claude/settings.local.json

.claude/settings.local.json

@@ -0,0 +1,141 @@
+{
+  "permissions": {
+    "allow": [
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/getting-started/**)",
+      "Read(//Users/jesse/Downloads/**)",
+      "Bash(~/.claude/plugins/cache/superpowers/skills/getting-started/list-skills)",
+      "Bash(~/.claude/plugins/cache/superpowers/skills/getting-started/skills-search \"prompt\")",
+      "Bash(~/.claude/plugins/cache/superpowers/skills/getting-started/skills-search \"communication\")",
+      "Bash(~/.claude/plugins/cache/superpowers/skills/getting-started/skills-search \"interaction\")",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/meta/testing-skills-with-subagents/**)",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/collaboration/dispatching-parallel-agents/**)",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/collaboration/requesting-code-review/**)",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/collaboration/writing-plans/**)",
+      "mcp__journal__search_journal",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/meta/creating-skills/**)",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/collaboration/brainstorming/**)",
+      "Read(//Users/jesse/.claude/plugins/cache/superpowers/skills/**)",
+      "Read(//Users/jesse/.claude/plugins/cache/**)",
+      "mcp__journal__read_journal_entry",
+      "Bash(/Users/jesse/git/superpowers/superpowers/skills/getting-started/list-skills)",
+      "Bash(/Users/jesse/git/superpowers/superpowers/skills/getting-started/skills-search refactor)",
+      "Read(//Users/jesse/Documents/GitHub/superpowers/**)",
+      "Bash(${CLAUDE_PLUGIN_ROOT}/skills/getting-started/list-skills:*)",
+      "Bash(/Users/jesse/Documents/GitHub/superpowers/superpowers/skills/getting-started/list-skills)",
+      "Bash(/Users/jesse/Documents/GitHub/superpowers/superpowers/skills/getting-started/skills-search editing)",
+      "Bash(list-skills brainstorm)",
+      "Read(//Users/jesse/.claude/commands/**)",
+      "Bash(git checkout:*)",
+      "Bash(/Users/jesse/.claude/plugins/cache/superpowers/skills/getting-started/list-skills)",
+      "Bash(ln:*)",
+      "Bash(git add:*)",
+      "Bash(git commit:*)",
+      "Bash(git push:*)",
+      "Read(//Users/jesse/.claude/plugins/**)",
+      "Read(//Users/jesse/.claude/**)",
+      "Bash(cat:*)",
+      "Read(//Users/jesse/.superpowers/**)",
+      "Bash(find:*)",
+      "Read(//Users/jesse/.clank/**)",
+      "Bash(./search-conversations:*)",
+      "Bash(./skills/collaboration/remembering-conversations/tool/search-conversations:*)",
+      "Bash(npm install)",
+      "Bash(sqlite3:*)",
+      "Bash(chmod:*)",
+      "Bash(/Users/jesse/Documents/GitHub/superpowers/superpowers/skills/collaboration/remembering-conversations/tool/migrate-to-config.sh:*)",
+      "Read(//Users/jesse/.config/superpowers/**)",
+      "Bash(./index-conversations --help)",
+      "Bash(./index-conversations:*)",
+      "Bash(bc)",
+      "Bash(bc:*)",
+      "Bash(./scripts/find-skills)",
+      "Bash(./scripts/run:*)",
+      "Bash(./scripts/find-skills test)",
+      "Bash(find-skills:*)",
+      "Bash(/Users/jesse/.claude/plugins/cache/superpowers/scripts/find-skills refactor)",
+      "Bash(mkdir:*)",
+      "Bash(git worktree add:*)",
+      "Bash([ -f package.json ])",
+      "Bash(git worktree:*)",
+      "Bash(gh repo create:*)",
+      "Bash(git clone:*)",
+      "Bash(gh repo view:*)",
+      "Bash(test:*)",
+      "Bash(git ls-tree:*)",
+      "Bash(git rm:*)",
+      "Bash(git mv:*)",
+      "Bash(/Users/jesse/Documents/GitHub/superpowers/superpowers-skills/skills/using-skills/find-skills)",
+      "Bash(tree:*)",
+      "Bash(/Users/jesse/Documents/GitHub/superpowers/superpowers-skills/skills/using-skills/skill-run --help)",
+      "Bash(echo:*)",
+      "Bash(git log:*)",
+      "Bash(git show:*)",
+      "Bash(git diff-tree:*)",
+      "Bash(bash:*)",
+      "Bash(xargs ls:*)",
+      "Bash(git rev-parse:*)",
+      "Bash(git reset:*)",
+      "Bash(./skills/using-skills/find-skills)",
+      "Bash(git rebase:*)",
+      "Bash(GIT_SEQUENCE_EDITOR=\"sed -i '' 's/^pick 683707a/edit 683707a/'\" git rebase:*)",
+      "Bash(gh pr create:*)",
+      "Bash(for:*)",
+      "Bash(do [ -f \"$skill\" ])",
+      "Bash(! grep -q \"^when_to_use:\" \"$skill\")",
+      "Bash(done)",
+      "Bash(gh issue view:*)",
+      "Bash(gh pr view:*)",
+      "Bash(gh pr diff:*)",
+      "Bash(/Users/jesse/Documents/GitHub/superpowers/superpowers-skills/skills/using-skills/find-skills test)",
+      "Bash(xargs -I {} bash -c 'dir=$(echo {} | sed \"\"\"\"s|/SKILL.md||\"\"\"\" | xargs basename); name=$(grep \"\"\"\"^name:\"\"\"\" {} | sed \"\"\"\"s/^name: //\"\"\"\"); echo \"\"\"\"$dir -> $name\"\"\"\"')",
+      "mcp__obsidian-mcp-tools__fetch",
+      "Skill(superpowers:using-git-worktrees)",
+      "Skill(superpowers:subagent-driven-development)",
+      "Bash(./test-raw.sh:*)",
+      "Bash(./chrome-ws raw \"ws://localhost:9222/devtools/page/test\" '{\"\"id\"\":1,\"\"method\"\":\"\"Browser.getVersion\"\"}')",
+      "Bash(./test-tabs.sh:*)",
+      "Bash(curl:*)",
+      "Bash(./chrome-ws tabs:*)",
+      "Bash(./chrome-ws close:*)",
+      "Bash(./chrome-ws raw:*)",
+      "Bash(./chrome-ws new:*)",
+      "Bash(./test-navigate.sh:*)",
+      "Bash(./test-interact.sh:*)",
+      "Bash(./test-extract.sh)",
+      "Bash(./test-wait.sh:*)",
+      "Bash(./test-e2e.sh:*)",
+      "Bash(./chrome-ws extract:*)",
+      "Bash(./chrome-ws screenshot:*)",
+      "Bash(./chrome-ws start:*)",
+      "Bash(./chrome-ws navigate:*)",
+      "Bash(git init:*)",
+      "Bash(git tag:*)",
+      "Skill(example-skills:mcp-builder)",
+      "Bash(npm run build)",
+      "Bash(npm run clean)",
+      "Bash(timeout 3s node dist/index.js)",
+      "Bash(git -C /Users/jesse/Documents/GitHub/superpowers/superpowers-chrome ls-files .claude-plugin/marketplace.json)",
+      "mcp__private-journal__read_journal_entry",
+      "Bash(git pull:*)",
+      "Skill(elements-of-style:writing-clearly-and-concisely)",
+      "Bash(gh release list:*)",
+      "Bash(gh release create:*)",
+      "Read(//Users/jesse/git/superpowers/superpowers-marketplace/.claude-plugin/**)",
+      "mcp__plugin_episodic-memory_episodic-memory__search",
+      "Skill(superpowers:writing-skills)",
+      "mcp__private-journal__process_thoughts",
+      "Skill(superpowers:brainstorming)",
+      "Skill(superpowers:using-superpowers)",
+      "Skill(episodic-memory:remembering-conversations)",
+      "Skill(superpowers-developing-for-claude-code:developing-claude-code-plugins)",
+      "Skill(working-with-claude-code)"
+    ],
+    "deny": [],
+    "ask": [],
+    "additionalDirectories": [
+      "/Users/jesse/Documents/GitHub/superpowers/superpowers-skills/",
+      "/Users/jesse/Documents/GitHub/superpowers/superpowers-marketplace",
+      "/Users/jesse/Documents/GitHub/superpowers/using-chrome-directly/"
+    ]
+  }
+}

lib/initialize-skills.sh

@@ -1,88 +0,0 @@
-#!/usr/bin/env bash
-set -euo pipefail
-
-SKILLS_DIR="${HOME}/.config/superpowers/skills"
-SKILLS_REPO="https://github.com/obra/superpowers-skills.git"
-
-# Check if skills directory exists and is a valid git repo
-if [ -d "$SKILLS_DIR/.git" ]; then
-    cd "$SKILLS_DIR"
-
-    # Get the remote name for the current tracking branch
-    TRACKING_REMOTE=$(git rev-parse --abbrev-ref --symbolic-full-name @{u} 2>/dev/null | cut -d'/' -f1 || echo "")
-
-    # Fetch from tracking remote if set, otherwise try upstream then origin
-    if [ -n "$TRACKING_REMOTE" ]; then
-        git fetch "$TRACKING_REMOTE" 2>/dev/null || true
-    else
-        git fetch upstream 2>/dev/null || git fetch origin 2>/dev/null || true
-    fi
-
-    # Check if we can fast-forward
-    LOCAL=$(git rev-parse @ 2>/dev/null || echo "")
-    REMOTE=$(git rev-parse @{u} 2>/dev/null || echo "")
-    BASE=$(git merge-base @ @{u} 2>/dev/null || echo "")
-
-    # Try to fast-forward merge first
-    if [ -n "$LOCAL" ] && [ -n "$REMOTE" ] && [ "$LOCAL" != "$REMOTE" ]; then
-        # Check if we can fast-forward (local is ancestor of remote)
-        if [ "$LOCAL" = "$BASE" ]; then
-            # Fast-forward merge is possible - local is behind
-            echo "Updating skills to latest version..."
-            if git merge --ff-only @{u} 2>&1; then
-                echo "✓ Skills updated successfully"
-                echo "SKILLS_UPDATED=true"
-            else
-                echo "Failed to update skills"
-            fi
-        elif [ "$REMOTE" != "$BASE" ]; then
-            # Remote has changes (local is behind or diverged)
-            echo "SKILLS_BEHIND=true"
-        fi
-        # If REMOTE = BASE, local is ahead - no action needed
-    fi
-
-    exit 0
-fi
-
-# Skills directory doesn't exist or isn't a git repo - initialize it
-echo "Initializing skills repository..."
-
-# Handle migration from old installation
-if [ -d "${HOME}/.config/superpowers/.git" ]; then
-    echo "Found existing installation. Backing up..."
-    mv "${HOME}/.config/superpowers/.git" "${HOME}/.config/superpowers/.git.bak"
-
-    if [ -d "${HOME}/.config/superpowers/skills" ]; then
-        mv "${HOME}/.config/superpowers/skills" "${HOME}/.config/superpowers/skills.bak"
-        echo "Your old skills are in ~/.config/superpowers/skills.bak"
-    fi
-fi
-
-# Clone the skills repository
-mkdir -p "${HOME}/.config/superpowers"
-git clone "$SKILLS_REPO" "$SKILLS_DIR"
-
-cd "$SKILLS_DIR"
-
-# Offer to fork if gh is installed
-if command -v gh &> /dev/null; then
-    echo ""
-    echo "GitHub CLI detected. Would you like to fork superpowers-skills?"
-    echo "Forking allows you to share skill improvements with the community."
-    echo ""
-    read -p "Fork superpowers-skills? (y/N): " -n 1 -r
-    echo
-
-    if [[ $REPLY =~ ^[Yy]$ ]]; then
-        gh repo fork obra/superpowers-skills --remote=true
-        echo "Forked! You can now contribute skills back to the community."
-    else
-        git remote add upstream "$SKILLS_REPO"
-    fi
-else
-    # No gh, just set up upstream remote
-    git remote add upstream "$SKILLS_REPO"
-fi
-
-echo "Skills repository initialized at $SKILLS_DIR"